Research Article

Cloning of GzABI5-3A3 Gene of and Functional Analysis in Tobacco  

Yashu Peng1 , Luhua Li1,2 , Yabing Dong1 , Ruhong Xu1,2 , Mingjian Ren1,2
1 College of Agriculture, Guizhou University, Guiyang, 550025, China
2 Guizhou Sub-Center of National Wheat Improvement Center, Guiyang, 550025, China
Author    Correspondence author
Molecular Plant Breeding, 2022, Vol. 13, No. 11   doi: 10.5376/mpb.2022.13.0011
Received: 12 Apr., 2022    Accepted: 20 Apr., 2022    Published: 02 Jun., 2022
© 2022 BioPublisher Publishing Platform
This article was first published in Molecular Plant Breeding in Chinese, and here was authorized to translate and publish the paper in English under the terms of Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Preferred citation for this article:

Peng Y.S., Li L.H., Dong Y.B., Xu R.H., and Ren M.J., 2022, Cloning of GzABI5-3A3 gene of ‘Guizimai 1’ and functional analysis in tobacco, Molecular Plant Breeding, 13(11): 1-11 (doi:10.5376/mpb.2022.13.0011)

Abstract

ABI5 plays an important role in many biological processes such as seed dormancy and germination, growth and development, anthocyanin synthesis and response to stress. A large number of studies have shown that ABI5 is involved in seed dormancy and germination, while few studies have shown that ABI5 is involved in anthocyanin synthesis. In order to explore the involvement of ABI5 transcription factors in the regulation of wheat anthocyanin synthesis, the full cDNA length of GzABI5-3A3 was amplified from a color wheat variety ‘Guizimai 1’. GzABI5-3A3 may be involved in biological processes regulating plant growth, photosynthesis, flowering, seed germination and anthocyanin accumulation. Phylogenetic tree analysis showed that GzABI5-3A3 was homologous to TaABI5D-SH-31, TaABI5D-SH-23 and TaABI5D-SW-23 in wheat. In this study, the overexpression vector of GzABI5-3A3 gene PBI121-GzABI5-3A3 was further constructed for tobacco genetic transformation. Eight tobacco transgenic lines were obtained by genetic transformation. Studies on GzABI5-3A3overexpressed transgenic lines showed that the anthocyanin content in seedling leaves of transgenic tobacco lines L4, L7 and L15 was significantly lower than that of the wild type, and the expression levels of anthocyanin synthesis pathways of structural genes NtPAL, NtDFR, NtANS and NtCHS were significantly decreased. The results showed that GzABI5-3A3 could negatively regulate anthocyanin synthesis by regulating the expression of structural genes in anthocyanin synthesis pathway. This study provides a research basis for the subsequent research on the molecular mechanism of GzABI5-3A3 regulating anthocyanin synthesis.

Keywords
GzABI5-3A3; Gene clone; Tobacco genetic transformation

Basic domain leucine zipper (bzip) transcription factors are the most conserved and widely distributed transcription factors in eukaryotes, which exists in most eukaryotic cells (Zhang et al., 2017; Cui et al., 2019). In plants, according to the structure and function of bzip transcription factors, the family can be divided into 10 subfamilies (namely A, B, C, D, E, F, G, H, I and S) (Yang et al., 2009), and its recognition core sequence is cis-acting elements containing ACGT, such as CACGTG (G box), GACGTC (C box), TACGTA (A box) (Ali et al., 2016). It was found that the promoter regions of some genes induced by light or abscisic acid (ABA) contain the above elements (Zhang, 2018). ABI5 (Abscisic acid insensitive 5) subfamily is a bzip transcription factor induced by ABA. It is found that it is closely related to stress resistance of plant (Finkelstein and Lynch, 2000; Zou et al., 2008). ABI5 can combine with specific cis-acting elements to form a regulatory network to improve the adaptability of plants to environmental stress and enable them to regulate their growth under stress. ABI5 plays an important role in many biological processes such as seed dormancy and germination, growth and plant response to stress. Miura et al. (2009) found that ABI5 inhibited seed germination and the sensitivity of seedling primary roots to ABA. Ibarra et al. (2015) found that RGL2 promotes seed secondary dormancy by regulating ABI5 expression and ABA synthesis. Guan et al. (2014) showed that ABI5 is an important factor regulating ABA mediated seed germination and growth inhibition after germination. Yang et al. (2016) found that in Arabidopsis thaliana (Linn.) Heynh., the decrease of sensitivity of BZR1-1D mutant to ABA is mediated by ABI5. Liao et al. (2016) showed that ABI5 is involved in regulating the response of Arabidopsis thaliana to pathogens and abscisic acid. In addition, ABI5 is also involved in regulating anthocyanin accumulation. Hoth et al. (2010) found that ABI5 in Arabidopsis thaliana plays a role in sucrose induced anthocyanin accumulation. After 3% sucrose treatment, the anthocyanin accumulation of ABI5-4 mutant increased, which was related to the increased expression of AtSUC1. It has been found that ABA signal induced anthocyanin accumulation in Arabidopsis thaliana seedlings, which may be achieved through the synergistic effect of ABI5 and MBW complex. It can be seen that ABI5 can regulate the accumulation of anthocyanins by regulating the expression of other anthocyanin related genes, but its mechanism needs to be further studied.

 

In Triticum aestivum L., ABI5 plays an important regulatory role in the biological processes of ear germination (Zhou et al., 2017) and seed dormancy and germination (Sun, 2016; Utsugi et al., 2020). Utsugi et al. (2020) obtained TaABI5 full-length linked overexpression vector from Triticum aestivum by amplification to transform Arabidopsis thaliana. It was found that the seed dormancy of Arabidopsis thaliana overexpression line was stronger than that of wild type. ‘Guizimai 1’ with purple grain was selected by Guizhou Branch of National Wheat Improvement Center through distant hybridization of Aegilops tauschii, Triticum ventricosum and Triticum turgidum L. var. durum. It has the characteristics of high yield, strong stress resistance and rich anthocyanins (Xu et al., 2018). At present, there is no relevant report that ABI5 involves in the regulation of anthocyanin accumulation of Triticum aestivum.

 

Therefore, we analyzed the biological information and expression pattern of GzABI5-3A3 in ‘Guizimai 1’, and further verified the overexpression transgenic tobacco lines in this study, so as to provide a research basis for further study on the molecular mechanism of ABI5 transcription factor regulating anthocyanin synthesis.

 

1 Results and Analysis

1.1 Construction of overexpression vector of GzABI5-3A3 gene of ‘Guizimai 1’

Using the cDNA extracted from the grain of ‘Guizimai 1’ 25 days after flowering as the template, the full length of GzABI5-3A3 sequence was amplified by PCR. A target fragment of more than 1 000 bp was obtained by 1% agarose gel electrophoresis (Figure 1) and connected to the overexpression vector pBI121. The plasmid was sent to the company for sequencing. The sequencing results showed that the amplified sequence was consistent with the sequence of GzABI5-3A3.

 

 

Figure 1 PCR analysis of GzABI5-3A3

Note: M: DL2000 Marker; 1: GzABI5-3A3 amplified product

 

1.2 Primary structure and secondary structure of protein encoded by GzABI5-3A3 gene

Using InterProScan to analyze the protein domain of GzABI5-3A3, it was found that its protein belongs to bzip gene family and contains a bzip conserved domain, which is located from 296th amino acid to 362nd amino acid. The protein characteristics were analyzed online by ProtPara. Its molecular formula was C1803H2885N533O575S33, molecular weight was 42 286.95, isoelectric point was 5.79, instability index was 56.53, fat index was 62.56, including 48 negatively charged residues and 39 positively charged residues. By analyzing its hydrophilicity and hydrophobicity through ProtScale, the analysis results showed that the average value of protein hydrophobicity is -0.501, and the protein instability coefficient is larger than 40, indicating that the protein is in an unstable state, and its average hydrophobicity value is less than 0, indicating that the protein is a hydrophilic protein (Figure 2). Using SOPMA tool to analyze the secondary structure, it was found that the secondary structure (Figure 3) is mainly α-helix (46.04%) and irregular curl (48.34%), followed by extended chain (4.09%) and β-turn (1.53%).

 

 

Figure 2 Hydrophobic, hydrophilic analysis of GzABI5-3A3

 

 

Figure 3 The predicated secondary structure of GzABI5-3A3

Note: Blue is α-helix; Purple is irregular curl; Red is extension chain; Green is β-turn

 

1.3 Cis-element of GzABI5-3A3 gene promoter

In order to further understand the function of GzABI5-3A3 gene, the cis-element of 1 891 bp of the upstream of GzABI5-3A3 gene promoter was analyzed. It was found that it contains a variety of cis-elements. In addition to the core elements TATA box and CAAT box of the promoter itself, there are also a variety of cis-elements involved in various reactions (Table 1). ARE and GC-motif are cis-elements necessary for anaerobic induction; AuxRR-core and TGA-element are involved in auxin responsiveness; TATC-box is gibberellin-responsive element; ABRE is involved in the abscisic acid responsiveness; CGTCA-motif, TGACG-motif and TCA-element are involved in the MeJA-responsiveness and salicylic acid responsiveness; G-Box, TGGC-motif and Sp1 are light responsive elements; It also contains a MYB binding site and a MYB recognition site. It can be inferred that GzABI5-3A3 may be involved in the regulation of the growth, photosynthesis, flowering, seed germination and anthocyanin accumulation of plant.

 

 

Table 1 Cis element analysis of GzABI5-3A3 gene promote

 

1.4 Amino acid homology of GzABI5-3A3 gene

Phylogenetic tree analysis showed that GzABI5-3A3 has the highest homology with TaABI5D-SH-31, TaABI5D-SH-23 and TaABI5D-SW-23 in Triticum aestivum (Figure 4). The results of sequence alignment between GzABI5-3A3 and TaABI5D-SH-31, TaABI5D-SH-23 as well as TaABI5D-SW-23 showed that the similarity of these four genes was 87.78% (Figure 5).

 

 

Figure 4 Phylogenetic tree of GzABI5-3A3

 

 

Figure 5 Multiple alignment of GzABI5-3A3 with TaABI5D-SW-23, TaABI5-SH-23 and TaABI5-SH-31 in wheat

 

1.5 Acquisition and validation of GzABI5-3A3 overexpressed transgenic tobacco plants

The leaf discs of sterile tobacco seedlings were placed in the co culture medium for dark culture for 3 days, and then the co cultured leaves were transferred to the screening differentiation medium for light culture. They were subcultured once in 7 days. After callus and 2 cm differentiation buds grew, the differentiation buds were cut and transferred to the rooting medium, and transplanted after adventitious roots grew. DNA extraction and PCR identification of transformed tobacco were carried out. Wild Nicotiana benthamiana and water were used as negative control and bacterial solution as positive control. PCR results showed that the transgenic plants could amplify bands with the same fragment size as the bacterial solution, while the negative control could not amplify bands (Figure 6), which proved that PBI121-GzABI5-3A3 had been successfully transferred into tobacco, and a total of 8 transgenic tobacco strains were obtained.

 

 

Figure 6 Validation of GzABI5-3A3 transgenic plants

Note: M: DL 2000 Marker; OE1, OE4, OE6, OE7, OE11, OE12, OE15, OE22: GzABI5-3A3 overexpressed positive plants; Water, WT: Negative control; Bacteria: Positive control

 

1.6 Anthocyanin content and gene expression of anthocyanin synthesis pathway in transgenic plants

The anthocyanin content of three overexpressed transgenic lines L4, L7 and L15 and the wild type were determined. The results showed that the anthocyanin content of transgenic plants L4, L7 and L15 were significantly lower than that of the wild type (Figure 7). Using overexpressing plants L4, L7 and L15 and wild tobacco cDNA as templates, the expression levels of NtPAL, NtCHS, NtDFR and NtANS in tobacco leaves were analyzed by qRT-PCR. The results showed that the expression of NtPAL in L4 was significantly lower than that in wild tobacco, and the expression of NtPAL in L7 and L15 was extremely significantly lower than that in wild tobacco (Figure 8B); The expression levels of NtCHS, NtDFR and NtANS in L4, L7 and L15 were extremely significantly lower than those in wild tobacco (Figure 8A; Figure 8C; Figure 8D).

 

 

Figure 7 Anthocyanin content in leaves of wild-type tobacco and GzABI5-3A3 overexpressed transgenic tobacco

Note: WT: Wild type; L4, L7, L15: GzABI5-3A3 overexpressed transgenic plants; * means significant difference (p<0.05), ** means very significant difference (p<0.01)

 

 

Figure 8 Wild-type tobacco and GzABI5-3A3 overexpressed transgenic tobacco leaves

Note: A: NtCHS; B: NtPAL; C: NtDFR; D: NtANS; WT: Wild type; L4, L7, L15: GzABI5-3A3 overexpressed transgenic plants; * means significant difference (p<0.05), ** means very significant difference (p<0.01)

 

2 Discussion

In this study, the full-length cDNA of GzABI5-3A3 was cloned from ‘Guizimai 1’. Sequence analysis showed that GzABI5-3A3 contained a bzip conserved domain, belonging to A subgroup of bzip family. Chang et al. (2019) showed that ABI5 is a kind of bzip transcription factor induced by ABA, which not only participates in the dormancy and germination of seeds (Sun et al., 2015; Zhao et al., 2016), regulates the growth of plants (Cheng et al., 2014; Li et al., 2019; Qi et al., 2020), but also regulates the accumulation of anthocyanins (Hoth et al., 2010; Cao and Liu, 2019). An et al. (2017) showed that in apple (Malus pumila Mill.), the bzip transcription factor MdHY5 regulates anthocyanin accumulation by regulating the expression of MdMYB10 gene and downstream anthocyanin biosynthesis gene. Chen et al. (2020) showed that ABA signal induces anthocyanin accumulation in Arabidopsis thaliana seedlings and may regulate anthocyanin synthesis through the synergistic effect of ABI5 and MBW complex. Through the cis-element analysis of GzABI5-3A3 promoter, it was found that the GzABI5-3A3 promoter region contains MYB binding sites and recognition sites, which was consistent with the research results of Chen et al. (2020). It can be speculated that GzABI5-3A3 may bind to MYB transcription factors and participate in the regulation of anthocyanin accumulation.

 

In order to further verify the function of GzABI5-3A3 in anthocyanin synthesis, the gene was overexpressed in tobacco and 8 transgenic lines were obtained. Liu et al. (2018) found that the bzip transcription factor SlHY5 in tomato (Lycopersicon esculentum Miller) regulates anthocyanin biosynthesis by binding the G box or ACE motif site to the promoters of anthocyanin biosynthesis genes CHS1, CHS2 and DFR. Hoth et al. (2010) found that ABI5 mutant can promote anthocyanin synthesis under 3% sucrose treatment, indicating that ABI5 can negatively regulate anthocyanin synthesis. In this study, three overexpressed lines L4, L7 and L15 were selected to determine their anthocyanin content. The results showed that the anthocyanin content of tobacco leaves of overexpressed lines was significantly lower than that of wild type, which was the same as that of Hoth et al. (2010). The gene expression of NtPAL, NtCHS, NtDFR and NtANS in anthocyanin synthesis pathway in GzABI5-3A3 overexpressed line was further studied. It was found that its expression was significantly lower than that of wild type. The results showed that GzABI5-3A3 can negatively regulate anthocyanin synthesis by inhibiting the expression of structural genes related to anthocyanin synthesis pathway. However, the molecular mechanism of how GzABI5-3A3 regulates anthocyanins remains to be further studied.

 

3 Materials and Methods

3.1 Test materials

The wheat variety ‘Guizimai 1’ with purple grain was selected and preserved by Guizhou Branch of National Wheat Improvement Center. It was approved by Guizhou Crop Variety Approval Committee in June 2015 with the approval number of Qianshenmai No. 2015003. The seeds of ‘Guizimai 1’ with full grains were planted in the Experimental Site of Guizhou Branch of National Wheat Improvement Center (26°25'N, 106°40'E). The ears with consistent flowering were selected for listing, marking, continuous observation and recording at the flowering stage, and the grains 25 days after flowering were selected as samples. The tobacco used for tobacco genetic transformation is Nicotiana benthamiana provided by our central laboratory.

 

3.2 Preparation of plant genomic DNA, RNA and cDNA

TaKaRa MiniBEST Plant RNA Extraction Kit was used to extract total RNA from grains of ‘Guizimai 1’ at different stages. The RNA concentration was detected by ultraviolet visible spectrophotometer (Genove Nano), 2 μL RNA were taken and the quality of RNA was detected by 1% agarose gel electrophoresis. The reverse transcription kit PrimeScript™ 1st Strand cDNA Synthesis Kit was used to reverse transcribe the total RNA into cDNA and the concentration was detected.

 

3.3 Construction of overexpression vector of GzABI5-3A3

Through the CDS sequence of GzABI5-3A3, the specific amplification primers GzABI5-3A3-F1 and GzABI5-3A3-R1 were designed (Table 2). The cDNA obtained by reverse transcription was used as the template for amplification. The amplified product was connected to the overexpression vector pBI121, transformed into the competent state of Escherichia coli Stbl2, coated on LB solid medium containing kanamycin, incubated in darkness at 37℃ for 12~16 hours, and the positive single colony was selected and sent to Sangon Biotech (Shanghai) Co., Ltd. for sequencing. After obtaining the correct clone, it was transformed into the competent state of Agrobacterium LBA4404 for tobacco genetic transformation.

 

 

Table 2 primer sequences

Note: The restriction sites are underlined

 

3.4 Analysis of GzABI5-3A3 gene sequence and coding protein

The primary structure, secondary structure and promoter cis-elements of GzABI5-3A3 protein were analyzed by online software such as ProtParam, Plantcare, InterProScan and SOPMA. The homologous sequence of GzABI5-3A3 was searched by BlastP and BlastX in NCBI. The phylogenetic tree was constructed by MEGA7 to determine the highly homologous sequences. The homologous sequences were compared by DNAMAN to preliminarily infer the function of GzABI5-3A3.

 

3.5 Genetic transformation of GzABI5-3A3 tobacco

The young leaves were taken from the upper part of tobacco sterile seedlings, cut into 1 cm×1 cm cubes and pre-cultured in MS medium at 28℃ for 3 days, then the pre-cultured leaves were infected in heavy suspension for 6 minutes, and dark cultured in co culture medium for 3 days. Then the co cultured leaves were placed in screening differentiation medium for light culture, subcultured once in 7 days. After callus and 2 cm differentiation buds grew, the differentiation buds were cut and transferred to rooting medium, and transplanted after adventitious roots grew (Figure 9).

 

 

Figure 9 Transgenic plants of GzABI5-3A3

Note: A: Co culture; B: Screening differentiation; C: Callus and growth; D: Rooting culture of differentiation

 

3.6 Identification of transgenic plants

DNAsecure Plant Kit (TIANGEN) was used to extract the DNA of transgenic plants. Agrobacterium bacterial solution was used as the positive control, and wild Nicotiana benthamiana and water were used as the negative control. The primer 35S-F was located on the vector, GzABI5-3A3-R2 was located on the target gene, and the amplification length was 1 521 bp. PCR reaction procedure was as follows: 95℃ for 5 min, 95℃ for 30 s, 60℃ for 30 s, 72℃ for 90 s, and for 30 cycles, 72℃: 5 min; Store at 4℃. 5 μL PCR products were taken and were detected by 1% agarose gel electrophoresis.

 

3.7 Determination of anthocyanin content in transgenic plants

The extraction method of anthocyanins from tobacco leaves adopted the method of Pattanaik et al. (2010). Transgenic tobacco leaves grown in the medium for 1 month were used as materials.

 

3.8 Expression analysis of anthocyanin synthesis pathway genes in transgenic plants

The expression levels of NtPAL, NtCHS, NtDFR and NtANS in transgenic tobacco leaves were detected by Real-time PCR. Among them, NtActin is an internal reference gene. The reaction system was as follows: 2 μL template cDNA, 1 μL upstream primers, 1 μL downstream primers, 12.5 μL SYBRⅡ, and 8.5 μL ddH2O. PCR reaction procedure was as follows: 95℃ for 30 s, 95℃ for 5 s, 51℃ for 30 s, for 40 cycles, and each sample repeated 3 times. The instrument used was Bio-Red CFX 96 Touch Real-time PCR, and the relative expression was calculated by 2-∆∆ct (Livak and Schmittgen, 2001).

 

Authors’ contributions

PYS was the experimental designer and executor of this research, completing data analysis and writing the first draft of the manuscript; DYB participated in experimental design and analysis of experimental results; RMJ, XRH and LLH were the conceivers and the persons in charge of the project, guiding the experimental design, data analysis, manuscript writing and modification. All authors read and approved the final manuscript.

 

Acknowledgments

This study was jointly funded by National Natural Science Foundation of China (31660390), Guizhou Agricultural Achievement Transformation Plan Project (Qiankehechengguo [2019]4246, Qiankehepingtairencai [2017]5788, Qiankehejichu [2019]1073), Key Special Project of “Breeding of Seven Major Crops” in the National Key Research and Development Plan of China (2017YFD0100901-4) and First-class Discipline Construction Project of Biology in Guizhou Province (Guidarenjihezi [2017]009).

 

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