Research Article

Genomic Sequence Analysis of 4 Culm Shape Variants of Moso Bamboo Based on Re-sequencing  

Shaohua Mu1 , Xianghua Yue2 , Juan Li1 , Xueping Li1 , Jian Gao1
1 Beijing Key Lab for Bamboo & Rattan Science and Technology, International Center for Bamboo and Rattan, National Forestry and Grassland Administration, Beijing, 100102, China
2 Huangshan Taiping Experimental Station, International Center for Bamboo and Rattan, Huangshan, 245716, China
Author    Correspondence author
Tree Genetics and Molecular Breeding, 2022, Vol. 12, No. 6   doi: 10.5376/tgmb.2022.12.0006
Received: 06 May, 2022    Accepted: 14 May, 2022    Published: 21 May, 2022
© 2022 BioPublisher Publishing Platform
This article was first published in Molecular Plant Breeding in Chinese, and here was authorized to translate and publish the paper in English under the terms of Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Preferred citation for this article:

Mu S.H., Yue X.H., Li J., Li X.P., and Gao J., 2022, Genomic sequence analysis of 4 culm shape variants of moso bamboo based on re-sequencing, Tree Genetics and Molecular Breeding, 12(6): 1-11 (doi: 10.5376/tgmb.2022.12.0006)


To reveal the whole genome differences of moso bamboo variations on culm shape, Phyllostachys edulis f. obliquinodaPhyllostachys edulis f. heterocycla, Phyllostachys pubescens f. curviculmi, Phyllostachys edulis f. tubaeformis were re-sequenced by whole genome re-sequencing, to detect and annotate the single nucleotide polymorphism (SNP), insertion-deletion (InDel) and structure variation (SV). The mutant genes were compared with the functional databases of GO, COG, KEGG, of which 7 477, 7 584, 7 221 and 7 583 mutant genes were annotated respectively. GO annotation classification included 56 functional groups of three functional classification systems: cellular component, molecular function and biological processes. COG classification showed that 369 genes involved in replication, recombination and repair, 327 genes involved in signal transduction mechanism, and 253 genes involved in transcription. The metabolic pathways of flavonoids, carotenoids and other substances involved in the mutant genes were analyzed by KEGG database. In-depth study of the regulatory pathways can provide a theoretical basis for further exploration of the rich polymorphism and genetic variation of moso bamboo, and the development of molecular markers for some significant characters.

Moso bamboo (Phyllostachys edulis) variant; Whole genome re-sequencing; Single nucleotide polymorphism; Small Indel; Structure variation
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